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	<title>Comments for Bench Marks</title>
	<atom:link href="http://cshbenchmarks.wordpress.com/comments/feed/" rel="self" type="application/rss+xml" />
	<link>http://cshbenchmarks.wordpress.com</link>
	<description>The Latest from CSHL Press</description>
	<lastBuildDate>Thu, 23 Jun 2011 13:07:13 +0000</lastBuildDate>
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		<title>Comment on Praise for Sydney Brenner: A Biography by martin d. packer</title>
		<link>http://cshbenchmarks.wordpress.com/2011/03/25/praise-for-sydney-brenner-a-biography/#comment-485</link>
		<dc:creator><![CDATA[martin d. packer]]></dc:creator>
		<pubDate>Thu, 23 Jun 2011 13:07:13 +0000</pubDate>
		<guid isPermaLink="false">http://cshbenchmarks.wordpress.com/?p=1857#comment-485</guid>
		<description><![CDATA[The book is seemingly riddled with errors such as referring to “the Cavendish Laboratories” and even “Cold Spring Harbor Laboratories” (sic), both are singular of course and definately not plural! Jack D. Dunitz, a British-born scientist is (according to a footnote) a ‘foreigner’ when it comes to being a member of the (British) Royal Society. The description of a pivotal moment in Brenner’s life in April 1953 when visiting Cambridge is a very poor piece of writing. There is little or nothing on Brenner’s associate Leslie Barnett. (Any future edition of this book requires a lot of corrections.)]]></description>
		<content:encoded><![CDATA[<p>The book is seemingly riddled with errors such as referring to “the Cavendish Laboratories” and even “Cold Spring Harbor Laboratories” (sic), both are singular of course and definately not plural! Jack D. Dunitz, a British-born scientist is (according to a footnote) a ‘foreigner’ when it comes to being a member of the (British) Royal Society. The description of a pivotal moment in Brenner’s life in April 1953 when visiting Cambridge is a very poor piece of writing. There is little or nothing on Brenner’s associate Leslie Barnett. (Any future edition of this book requires a lot of corrections.)</p>
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		<title>Comment on High Yield Recombinant Protein Production by David Crotty</title>
		<link>http://cshbenchmarks.wordpress.com/2010/08/09/high-yield-recombinant-protein-production/#comment-289</link>
		<dc:creator><![CDATA[David Crotty]]></dc:creator>
		<pubDate>Fri, 03 Sep 2010 14:27:57 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/?p=1338#comment-289</guid>
		<description><![CDATA[The protocol linked above deals with bacterial systems for protein production.  Systems for the production of recombinant proteins in algae have seen great development in recent years, and perhaps &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/pubmed/20556634&quot; rel=&quot;nofollow&quot;&gt;this review&lt;/a&gt; will lead you to the answers you seek.]]></description>
		<content:encoded><![CDATA[<p>The protocol linked above deals with bacterial systems for protein production.  Systems for the production of recombinant proteins in algae have seen great development in recent years, and perhaps <a href="http://www.ncbi.nlm.nih.gov/pubmed/20556634" rel="nofollow">this review</a> will lead you to the answers you seek.</p>
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		<title>Comment on High Yield Recombinant Protein Production by M Kishore</title>
		<link>http://cshbenchmarks.wordpress.com/2010/08/09/high-yield-recombinant-protein-production/#comment-288</link>
		<dc:creator><![CDATA[M Kishore]]></dc:creator>
		<pubDate>Fri, 03 Sep 2010 09:12:02 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/?p=1338#comment-288</guid>
		<description><![CDATA[Good evening Sir,
What is the general processed followed in  Production of large amounts of protein in algae. Because my protein i need it with high structural activity.]]></description>
		<content:encoded><![CDATA[<p>Good evening Sir,<br />
What is the general processed followed in  Production of large amounts of protein in algae. Because my protein i need it with high structural activity.</p>
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		<title>Comment on Link Roundup 9-26-2008 by Paul Marston</title>
		<link>http://cshbenchmarks.wordpress.com/2008/09/26/link-roundup-9-26-2008/#comment-181</link>
		<dc:creator><![CDATA[Paul Marston]]></dc:creator>
		<pubDate>Sun, 08 Aug 2010 19:16:07 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/2008/09/26/link-roundup-9-26-2008/#comment-181</guid>
		<description><![CDATA[&quot;nothing more terryfing than be alone with one own thoughts&quot; is a quote I remember from decades ago, was trying to search for it, doubt it included a reference to Web 2.0.  Do you remember the original author. I see dozens of hits referencing the phrase &quot;alone...&quot;, but not &quot; one of the most terrifying&quot;.  Thanks!!

Paul Marston]]></description>
		<content:encoded><![CDATA[<p>&#8220;nothing more terryfing than be alone with one own thoughts&#8221; is a quote I remember from decades ago, was trying to search for it, doubt it included a reference to Web 2.0.  Do you remember the original author. I see dozens of hits referencing the phrase &#8220;alone&#8230;&#8221;, but not &#8221; one of the most terrifying&#8221;.  Thanks!!</p>
<p>Paul Marston</p>
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		<title>Comment on Web 2.0 for Biologists&#8211;Are any of the current tools worth using? by The RIN Report on Researchers and Web 2.0: If You Build It . . . Well, You Know the Rest &#171; The Scholarly Kitchen</title>
		<link>http://cshbenchmarks.wordpress.com/2008/04/03/web-20-for-biologists-are-any-of-the-current-tools-worth-using/#comment-95</link>
		<dc:creator><![CDATA[The RIN Report on Researchers and Web 2.0: If You Build It . . . Well, You Know the Rest &#171; The Scholarly Kitchen]]></dc:creator>
		<pubDate>Thu, 15 Jul 2010 09:25:38 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/2008/04/03/web-20-for-biologists-are-any-of-the-current-tools-worth-using/#comment-95</guid>
		<description><![CDATA[[...] with everything we&#8217;ve seen for the last few years (see previous columns here, here, here, and here).  Predictions that new online technologies will revolutionize the way scientists and other [...]]]></description>
		<content:encoded><![CDATA[<p>[...] with everything we&#8217;ve seen for the last few years (see previous columns here, here, here, and here).  Predictions that new online technologies will revolutionize the way scientists and other [...]</p>
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		<title>Comment on Plant RNAi method updated by David Crotty</title>
		<link>http://cshbenchmarks.wordpress.com/2009/02/05/plant-rnai-method-updated/#comment-231</link>
		<dc:creator><![CDATA[David Crotty]]></dc:creator>
		<pubDate>Mon, 21 Jun 2010 14:20:39 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/?p=361#comment-231</guid>
		<description><![CDATA[Thanks for the comment Jonny.  I think you&#039;re right, in that what I&#039;ve written above is a bit ambiguous.  The use of TRV is the most efficient of VIGS vectors, not necessarily the most efficient means of gene silencing altogether, sorry if I was unclear.  Please do take a look at &lt;a href=&quot;http://cshprotocols.cshlp.org/cgi/content/full/2009/2/pdb.prot5139&quot; rel=&quot;nofollow&quot;&gt;the actual protocol&lt;/a&gt; (it&#039;s one of our &lt;a href=&quot;http://cshprotocols.cshlp.org/misc/sample.dtl&quot; rel=&quot;nofollow&quot;&gt;featured articles&lt;/a&gt; and is freely accessible to subscribers and non-subscribers alike).  The authors make a more eloquent case for VIGS than I can, given their higher level of expertise.  Each protocol has space for comments (see &lt;a href=&quot;http://cshprotocols.cshlp.org/cgi/eletter-submit/2009/2/pdb.prot5139&quot; rel=&quot;nofollow&quot;&gt;Update/Discuss This Protocol&lt;/a&gt; in the info box at top right).  If you have suggestions for readers of alternative techniques, I&#039;m sure they would be greatly appreciated (and of course we&#039;d welcome &lt;a href=&quot;http://submit.cshprotocols.org/&quot; rel=&quot;nofollow&quot;&gt;submission&lt;/a&gt; of alternate protocols as well).]]></description>
		<content:encoded><![CDATA[<p>Thanks for the comment Jonny.  I think you&#8217;re right, in that what I&#8217;ve written above is a bit ambiguous.  The use of TRV is the most efficient of VIGS vectors, not necessarily the most efficient means of gene silencing altogether, sorry if I was unclear.  Please do take a look at <a href="http://cshprotocols.cshlp.org/cgi/content/full/2009/2/pdb.prot5139" rel="nofollow">the actual protocol</a> (it&#8217;s one of our <a href="http://cshprotocols.cshlp.org/misc/sample.dtl" rel="nofollow">featured articles</a> and is freely accessible to subscribers and non-subscribers alike).  The authors make a more eloquent case for VIGS than I can, given their higher level of expertise.  Each protocol has space for comments (see <a href="http://cshprotocols.cshlp.org/cgi/eletter-submit/2009/2/pdb.prot5139" rel="nofollow">Update/Discuss This Protocol</a> in the info box at top right).  If you have suggestions for readers of alternative techniques, I&#8217;m sure they would be greatly appreciated (and of course we&#8217;d welcome <a href="http://submit.cshprotocols.org/" rel="nofollow">submission</a> of alternate protocols as well).</p>
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		<title>Comment on Plant RNAi method updated by Jonny Dalzell</title>
		<link>http://cshbenchmarks.wordpress.com/2009/02/05/plant-rnai-method-updated/#comment-230</link>
		<dc:creator><![CDATA[Jonny Dalzell]]></dc:creator>
		<pubDate>Sun, 20 Jun 2010 21:58:49 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/?p=361#comment-230</guid>
		<description><![CDATA[Having talked about the utility of VIGS with many individuals using it, the feeling seems to be that is an extremely ineffcient way of triggering RNAi in plants, mostly because of the mosaic nature of dsRNA expression (which follows viral spread).  I think the comments above are slightly misleading...let&#039;s
not forget, one of our best guesses for the origin of &#039;classical&#039; RNAi is as an anti-viral response.  Loading plant cells with viral RNA just leads
to expression peaks in RNAi inhibitors, and a reduction in efficacy.]]></description>
		<content:encoded><![CDATA[<p>Having talked about the utility of VIGS with many individuals using it, the feeling seems to be that is an extremely ineffcient way of triggering RNAi in plants, mostly because of the mosaic nature of dsRNA expression (which follows viral spread).  I think the comments above are slightly misleading&#8230;let&#8217;s<br />
not forget, one of our best guesses for the origin of &#8216;classical&#8217; RNAi is as an anti-viral response.  Loading plant cells with viral RNA just leads<br />
to expression peaks in RNAi inhibitors, and a reduction in efficacy.</p>
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		<title>Comment on Information overload is NOT filture failure by Nathan Zeldes</title>
		<link>http://cshbenchmarks.wordpress.com/2009/01/14/information-overload-is-not-filture-failure/#comment-213</link>
		<dc:creator><![CDATA[Nathan Zeldes]]></dc:creator>
		<pubDate>Wed, 19 May 2010 16:03:09 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/?p=289#comment-213</guid>
		<description><![CDATA[Glad to see I&#039;m not alone in being uneasy with the &quot;filter failure&quot; meme. You come from a different angle - mine&#039;s more enterprise oriented, yours academic - but I agree the issue isn&#039;t that &quot;there’s more interesting stuff out there than I could ever handle if I tried to read all of it&quot;.

I share my take at http://bit.ly/bDUDuB .]]></description>
		<content:encoded><![CDATA[<p>Glad to see I&#8217;m not alone in being uneasy with the &#8220;filter failure&#8221; meme. You come from a different angle &#8211; mine&#8217;s more enterprise oriented, yours academic &#8211; but I agree the issue isn&#8217;t that &#8220;there’s more interesting stuff out there than I could ever handle if I tried to read all of it&#8221;.</p>
<p>I share my take at <a href="http://bit.ly/bDUDuB" rel="nofollow">http://bit.ly/bDUDuB</a> .</p>
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		<title>Comment on Why Web 2.0 is failing in Biology by Do You Believe in Social Networks for Researchers ? &#124; Open Your Innovation</title>
		<link>http://cshbenchmarks.wordpress.com/2008/02/14/why-web-20-is-failing-in-biology/#comment-63</link>
		<dc:creator><![CDATA[Do You Believe in Social Networks for Researchers ? &#124; Open Your Innovation]]></dc:creator>
		<pubDate>Sun, 16 May 2010 10:00:40 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/2008/02/14/why-web-20-is-failing-in-biology/#comment-63</guid>
		<description><![CDATA[[...] David Crotty&#8217;s blog [...]]]></description>
		<content:encoded><![CDATA[<p>[...] David Crotty&#8217;s blog [...]</p>
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		<title>Comment on Digital intimacy by Science in the Open &#187; Blog Archive &#187; Convergent evolution of scientist behaviour on Web 2.0 sites?</title>
		<link>http://cshbenchmarks.wordpress.com/2008/09/18/digital-intimacy/#comment-180</link>
		<dc:creator><![CDATA[Science in the Open &#187; Blog Archive &#187; Convergent evolution of scientist behaviour on Web 2.0 sites?]]></dc:creator>
		<pubDate>Sun, 03 Jan 2010 10:48:34 +0000</pubDate>
		<guid isPermaLink="false">http://www.cshblogs.org/cshprotocols/2008/09/18/digital-intimacy/#comment-180</guid>
		<description><![CDATA[[...] thought sparked off by a comment from Maxine Clarke at Nature Networks where she posted a link to a post by David Crotty. The thing that got me thinking was Maxine&#8217; statement: I would add that in my [...]]]></description>
		<content:encoded><![CDATA[<p>[...] thought sparked off by a comment from Maxine Clarke at Nature Networks where she posted a link to a post by David Crotty. The thing that got me thinking was Maxine&#8217; statement: I would add that in my [...]</p>
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